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Table 3 Target sequences of the labelled probes used for detection of genes following amplification of cDNA using real time PCR

From: Exposure to ultrafine carbon particles at levels below detectable pulmonary inflammation affects cardiovascular performance in spontaneously hypertensive rats

Gene Name

Gene Symbol*

Target Probe Sequence**

β-Actin

Actb

CTTCCTGGGTATGGAATCCTGTGGC

Hypoxanthine guanine phosphoribosyl transferase (HPRT)

Hprt

AGGGATTTGAATCATGTTTGTGTCA

Serine (or cysteine) peptidase inhibitor, claude E, member1 (PAI; plasminogen activator inhibitor-1)

Serpine1

CCTCATCCTGCCTAAGTTCTCTCTG

Coagulation Factor 3 (TF; Tissue Factor)

F3

AGAGTGTCCTGGGAGAAACACTCAT

Heme Oxygenase-1 (HO-1)

Hmox1

AAGGCTTTAAGCTGGTGATGGCCTC

Chemokine (C-X-C motif) ligand 2 (MIP-2; macrophage inflammatory protein-2; MIP-2)

Cxcl2

CCAAAAGATACTGAACAAAGGCAAG

Tumor Necrosis Factor alpha (TNF-α)

Tnf

TCACACTCAGATCATCTTCTCAAAA

Endothelin 1 (ET-1)

Edn1

GCTCCAGAAACAGCTGTCTTGGGAG

Endothelin Receptor A (ETA)

Ednra

GTGTTTAAGCTGTTGGCGGGGCGCT

Endothelin Receptor B (ETB)

Ednrb

GCCTACAAGCTGCTGGCAGGGGACT

  1. *Gene symbols are as provided by the Applied Biosystems Incorporated.
  2. **Target probe sequence represents the sequence which will hybridize with the PCR product and it is labeled such that once hybridized its fluorescence levels will be quantitatively detected by the ABI 7900 HT Sequence Detection System (Applied Biosystems). The forward and reverse primer sequences are proprietary and not provided by Applied Biosystems Inc.