Table 3 Percent change in most abundant phyla and genus across exposure and probiotic-treatment groups
|  | HF + DEP compared to HF + CON | HF + DEP + PRO compared to HF + CON + PRO | ||
|---|---|---|---|---|
Percent change (%) | Difference | Percent change (%) | Difference | |
P_Firmicutes |  − 10.70 |  − 7.47 |  − 1.50 |  − 0.95 |
G_Lactobacillus |  − 13.44 |  − 6.36 |  − 50.24 |  − 18.49 |
G_Lactococcus |  + 31.36 |  + 3.93 |  + 26.27 |  + 8.18 |
G_Blautia |  − 58.53 |  − 0.81 |  + 86.00 |  + 3.08 |
G_Clostridium |  + 18.78 |  + 0.21 |  + 56.47 |  + 0.75 |
G_Natronincola |  − 96.02 |  − 2.75 |  + 41.67 |  + 0.10 |
G_Turicibacter |  − 90.67 |  − 2.37 |  − 90.10 |  − 0.20 |
G_Alkalphilius |  − 86.48 |  − 0.42 |  + 81.13 |  + 1.92 |
G_Coprobacillus |  − 70.62 |  − 0.27 |  + 11.49 |  + 0.01 |
G_Pediococcus |  − 8.84 |  − 0.13 |  + 42.21 |  + 0.20 |
G_Staphylococcus |  + 49.13 |  + .0.52 |  + 42.21 |  + 0.15 |
G_Sarcina |  − 78.37 |  − 0.30 |  + 22.67 |  + 0.02 |
G_Enterococcus |  − 49.26 |  − 0.38 |  + 76.12 |  + 0.15 |
G_Anaerofilum |  − 63.14 |  − 0.08 |  + 86.07 |  + 0.43 |
G_Streptococcus |  + 18.16 |  − 0.82 |  + 21.61 |  + 0.19 |
P_Proteobacteria |  + 41.90 |  + 14.6 |  + 0.85 |  + 0.21 |
G_Escherichia |  + 59.48 |  + 13.53 |  + 4.13 |  + 0.65 |
G_Pseudomonas |  + 0.52 |  + 0.04 |  + 15.79 |  + 0.65 |
G_Serratia |  + 53.06 |  + 3.66 |  + 10.70 |  + 0.58 |
G_Delftia |  + 78.43 |  + 2.28 |  + 23.28 |  + 0.41 |
P_Actinobacteria |  − 85.81 |  − 8.18 |  − 8.91 |  − 1.04 |
G_Bifidobacterium |  − 97.07 |  − 10.26 |  − 2.62 |  − 0.32 |
P_Verrucomicrobia |  + 16.06 |  + 0.04 |  + 92.47 |  + 1.06 |
G_Akkermansia |  + 23.20 |  + 0.08 |  + 95.37 |  + 1.30 |
P_Bacteriodetes |  + 86.91 |  + 0.86 |  + 67.85 |  + 0.75 |
P_Deferribacteres |  + 67.23 |  + 0.03 |  − 57.18 |  − 0.01 |
P_Thermi |  + 72.50 |  + 0.13 |  − 16.88 |  − 0.01 |
P_Tenericutes |  − 55.75 |  − 0.02 |  + 13.10 |  + 0.01 |