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Table 4 Pathways significantly deregulated after EOM-treatment of HEL 12469 cells as identified by Goeman's global test

From: Global gene expression changes in human embryonic lung fibroblasts induced by organic extracts from respirable air particles

ID

KEGG pathway

Ostrava-Bartovice

Ostrava-Poruba

Karvina

Trebon

  

Adj. p-value*

980

Metabolism of xenobiotics by cytochrome P450

4.06E-04

2.97E-05

4.71E-04

1.70E-03

4270

Vascular smooth muscle contraction

3.08E-04

2.06E-03

1.09E-01

2.41E-03

4310

Wnt signaling pathway

5.14E-03

1.32E-04

7.07E-03

2.88E-03

30

Pentose phosphate pathway

5.64E-03

8.84E-03

1.27E-01

3.19E-02

140

Steroid hormone biosynthesis

1.03E-02

2.58E-03

4.29E-03

3.37E-02

2010

ABC transporters

1.17E-02

1.86E-03

3.51E-02

4.34E-03

561

Glycerolipid metabolism

1.50E-02

2.63E-03

4.38E-02

5.03E-03

770

Pantothenate and CoA biosynthesis

1.64E-02

4.78E-02

3.68E-02

1.46E-01

4540

Gap junction

1.80E-02

3.50E-02

8.14E-02

3.63E-02

4350

TGF-beta signaling pathway

1.84E-02

3.07E-02

3.09E-02

1.29E-02

4115

p53 signaling pathway

2.39E-02

1.70E-01

2.74E-01

7.77E-02

520

Amino sugar and nucleotide sugar metabolism

2.58E-02

6.46E-03

1.22E-01

9.54E-02

600

Sphingolipid metabolism

2.63E-02

2.72E-01

8.92E-02

3.45E-02

52

Galactose metabolism

2.63E-02

1.97E-02

1.86E-01

7.77E-02

620

Pyruvate metabolism

2.89E-02

2.68E-02

1.00E+00

4.05E-02

982

Drug metabolism - cytochrome P450

3.01E-02

9.84E-05

1.49E-03

9.04E-02

480

Glutathione metabolism

3.08E-02

2.13E-03

7.91E-03

6.30E-02

72

Synthesis and degradation of ketone bodies

3.83E-02

2.10E-01

2.74E-01

1.00E+00

4340

Hedgehog signaling pathway

5.23E-02

2.22E-03

5.75E-02

4.33E-02

5217

Basal cell carcinoma

5.06E-02

5.04E-03

4.86E-02

5.16E-02

40

Pentose and glucuronate interconversions

6.10E-02

5.70E-03

1.59E-01

6.37E-02

4142

Lysosome

7.53E-02

5.78E-03

4.30E-01

7.05E-02

565

Ether lipid metabolism

5.47E-02

1.23E-02

1.52E-02

1.38E-02

4614

Renin-angiotensin system

5.43E-02

1.33E-02

1.22E-01

6.17E-01

590

Arachidonic acid metabolism

5.71E-02

1.97E-02

7.05E-02

4.70E-02

4744

Phototransduction

1.56E-01

2.07E-02

4.15E-01

2.22E-02

511

Other glycan degradation

1.09E-01

2.64E-02

5.96E-01

7.55E-02

4610

Complement and coagulation cascades

1.15E-01

2.85E-02

9.83E-01

4.56E-01

5222

Small cell lung cancer

1.48E-01

3.07E-02

4.63E-01

7.55E-02

4612

Antigen processing and presentation

4.26E-01

3.35E-02

5.52E-01

2.08E-01

5140

Leishmaniasis

1.18E-01

3.58E-02

2.20E-01

5.18E-02

4145

Phagosome

5.26E-02

4.38E-02

1.00E+00

1.16E-01

564

Glycerophospholipid metabolism

3.80E-01

1.08E-01

7.85E-01

6.10E-03

4730

Long-term depression

2.77E-01

4.64E-01

1.00E+00

7.49E-03

  1. KEGG pathways deregulated in all localities are in bold. PM2.5 samples were collected in 4 localities of the Czech Republic, and extractable organic matters (EOMs) were prepared as described in Materials and Methods.
  2. *The procedure of Holm for control of the family-wise error rate [62].