Environmentally persistent free radicals induce airway hyperresponsiveness in neonatal rat lungs
- Shrilatha Balakrishna†1, 3,
- Jordy Saravia†1,
- Paul Thevenot1,
- Terry Ahlert1,
- Slawo Lominiki2,
- Barry Dellinger2 and
- Stephania A Cormier1Email author
© Balakrishna et al; licensee BioMed Central Ltd. 2011
Received: 16 July 2010
Accepted: 9 March 2011
Published: 9 March 2011
Increased asthma risk/exacerbation in children and infants is associated with exposure to elevated levels of ultrafine particulate matter (PM). The presence of a newly realized class of pollutants, environmentally persistent free radicals (EPFRs), in PM from combustion sources suggests a potentially unrecognized risk factor for the development and/or exacerbation of asthma.
Neonatal rats (7-days of age) were exposed to EPFR-containing combustion generated ultrafine particles (CGUFP), non-EPFR containing CGUFP, or air for 20 minutes per day for one week. Pulmonary function was assessed in exposed rats and age matched controls. Lavage fluid was isolated and assayed for cellularity and cytokines and in vivo indicators of oxidative stress. Pulmonary histopathology and characterization of differential protein expression in lung homogenates was also performed.
Neonates exposed to EPFR-containing CGUFP developed significant pulmonary inflammation, and airway hyperreactivity. This correlated with increased levels of oxidative stress in the lungs. Using differential two-dimensional electrophoresis, we identified 16 differentially expressed proteins between control and CGUFP exposed groups. In the rats exposed to EPFR-containing CGUFP; peroxiredoxin-6, cofilin1, and annexin A8 were upregulated.
Exposure of neonates to EPFR-containing CGUFP induced pulmonary oxidative stress and lung dysfunction. This correlated with alterations in the expression of various proteins associated with the response to oxidative stress and the regulation of glucocorticoid receptor translocation in T lymphocytes.
There is little doubt that exposure to airborne particulate matter (PM) poses a significant health risk, and there is strong evidence to support the basic concept that fine and ultrafine PM exposure have adverse pulmonary effects. Increased amounts of ambient PM have been associated with asthma and chronic obstructive pulmonary disease (COPD) exacerbations, increased hospitalizations for respiratory diseases, lung function decline, and even increased respiratory mortality in susceptible populations, including infants and children [1–7]. Despite the significant epidemiological evidence demonstrating an association between PM exposure and adverse pulmonary effects, the mechanisms responsible for the adverse pulmonary effects are not entirely clear. Moreover, few experimental studies using age-relevant animal models have been used in order to investigate the detrimental effects of PM on developing lung function.
Airborne PM is a complex mixture of chemical species, and the unique components in PM that are responsible for adverse health effects remain elusive. A number of anthropogenic sources including combustion processes generate PM. These emissions are a heterogeneous mixture of particles, oxides of nitrogen, sulfur, carbon, dioxins furans, metals, chlorinated hydrocarbons (CHCs), and polycyclic aromatic hydrocarbons (PAHs). It is extremely challenging to understand the effect of potential synergisms between chemicals within the complex mixtures to which humans are exposed and delineate their potential health impacts.
We have reported the presence of environmentally persistent free radicals (EPFRs) associated with airborne fine and ultrafine PM samples collected from different locations across the United States [8–10]. We have further generated data demonstrating that the toxicity of real-world PM samples increases as a function of EPFR concentration (manuscript in preparation). The presence of EPFRs in real-world PM samples suggests a potentially unrecognized risk factor for the development and/or exacerbation of asthma. Thus, we have developed a model for understanding the health impacts of combustion-generated ultrafine particles (CGUFP) . Specifically, we have developed CGUFP containing EPFRs using 1,2-dichlorobenzene (DCB230) and lacking EPFRs (DCB50) to understand their role in the development of asthma.
While exposure to PM causes adverse health effects in most people, children are especially susceptible to these effects, as they inhale more air per pound of body weight than adults; spend more time outdoors; and possess immature immune systems. Exposure to ambient air pollution is correlated with significant deficits in respiratory growth, leading to clinically important deficits in lung function in children . The present investigations assessed the effects of EPFR-containing CGUFP on lung function in developing neonatal rat lungs.
Neonatal DCB230 exposure resulted in acute airway dysfunction
CGUFP enhances oxidative stress in neonatal lungs
DCB230 increased airway lymphocyte infiltration neonatal rats
To begin to address the possible mechanisms responsible for DCB230 induced AHR, we assessed the relative contributions of lymphocyte subpopulations to the airway inflammation observed in CGUFP-exposed neonates. DCB230 exposure augmented the influx of both CD4+ and CD8+ lymphocytes and of dendritic cells into the lung compared to the controls (Figure 3B).
Altered cytokines in neonatal lungs exposed to DCB230
DCB230 induces distinct changes in pulmonary architecture
CGUFP exposure and protein expression in lungs
PM air pollutants exacerbate a variety of pulmonary disorders, including chronic obstructive pulmonary disease [13, 14], asthma [15, 16] and lower respiratory tract infections, especially in infants and the elderly [17–21]. The lungs of neonates and infants are undergoing tremendous structural and functional changes. Little information and only a few studies have been developed to understand the impact of exposure to environmental air pollutants during postnatal development.
Our results show that EPFR-containing DCB230 induced dramatic and sustained AHR and pulmonary inflammation in neonatal rats. The inflammation following DCB230 exposure was characterized by increased lymphocyte and neutrophil cells in the airways and by elevations in the cytokines TNF-α, IL-1β, IFNγ, IL-10, and IL-6 within 24 hr of exposure. Decreases in IL-18, GRO/KC, MCP-1, MIP-1α and VEGF were observed within this same time frame. By 72 hr after exposure, some cytokines (IL-18, VEGF, IFNγ, IL-10, IL-6, and MIP-1α) had begun to return to control levels while earlier trends seemed to persist for others (GRO/KC, TNFα, IL-1β). No changes in lung function were observed following exposure to either of the controls (air or non-EPFR-containing DCB50). The lung dysfunction observed following DCB230 exposure correlated with increased oxidative stress as indicated by elevated glutathione levels, decreased GSH:GSSG ratios, and increased 8-isoprostanes in the BALF and lungs of DCB230 exposed neonates. The increased AHR observed here in neonates is consistent with the findings of many investigators studying the impact of ambient PM on AHR in adult rodent exposure models [22–24].
Eosinophilic inflammation is a hallmark of allergic asthma and we found it somewhat surprising that increases in this cell population were not observed in response to DCB230 exposure in either the lavage fluid or the lung tissue. There are several potential reasons increases in eosinophils was not observed: 1) eosinophilic response to PM is strain/species specific; 2) the age of the animal at the time of exposure plays a role in the cellular response that develops [25, 26]; and/or 3) the chemical composition of the particles is important in determining the cellular response. Eosinophils were observed following PM exposure in adult A/J mice, which are known to generate a strong eosinophilic response. Brown-Norway rats, which are also known to exhibit a strong allergic phenotype including elevations in pulmonary eosinophils in response to allergen exposure, were used in these studies and therefore, the absence of eosinophils does not appear to be a strain-specific response. We have demonstrated that age of initial exposure to certain viruses is critical in determining the ensuing cellular and immune response. We are currently performing equivalent exposures to DCB230 in adult animals to determine if the lack of eosinophils is an age-specific phenomenon. Finally, composition of the particles is also likely to play a significant role in defining the type of inflammation initiated and the ensuing T cell response and may thus account for the observed difference in eosinophil levels.
Interestingly, we observed an increase in neutrophils in the lavage fluid. An influx of neutrophils has been reported following adult murine exposure to ambient PM [22, 24, 27] and is observed in as many as 50% of all asthmatics and correlates with asthma severity [28–30]. In contrast to the increase in neutrophils, we observed a significant decrease in macrophages in the lavage fluid at 24 hr post-exposure. Although studies are ongoing to fully decipher the reason for this decrease in macrophage/monocyte cells from the lavage fluid, it appears that these cells along with DCs are the principal cells responsible for particle uptake in the lung and that there is enhanced recruitment of these cells to the draining lymph node following exposure (manuscript in preparation). Interestingly, an adaptive immune response as evidenced by increased CD4+ and CD8+ T lymphocytes was also observed following exposure to DCB230. It is assumed that the lymphocytes are recruited in response to chemokines secreted by antigen presenting cells and that their role is to provide protection against subsequent exposures to DCB230. Furthermore, these cells most likely play a significant role in both the observed AHR and pulmonary pathology following DCB230 exposure. Future studies are being designed to determine how these cells are recruited to the lung as well as their role in the observed pulmonary pathophysiology associated with EPFR exposure.
Several pieces of data support the involvement of oxidative stress in EPFR-induced pulmonary inflammation and injury in this neonatal exposure model. First, we saw increased production of 8-isoprostanes, a marker of the oxidation of tissue phospholipids, in the lungs and lavage fluid of exposed neonates. Oxidative stress was most prominent in neonates that had been exposed to DCB230. Augmented levels of isoprostanes have been found in serum, plasma and urine of heavy smokers [31, 32] and in exhaled condensate of asthmatic patients . Second, we observed an increase in total glutathione that correlated with a decreased ratio of GSH:GSSG indicative of oxidative stress. Increased oxidative stress has been observed in the epithelial lung fluid of children with severe asthma  and is associated with pulmonary deterioration [35, 36]. Decreased GSH:GSSG ratios in conjunction with increased 8-isoprostane levels in the lungs seem to confirm a role for EPFR induced lung injury in neonatal rats and also offers a valid mechanism by which exposure to PM exacerbates allergic asthma.
Exposure to DCB50, a non-EPFR containing particle, also induced some amount of oxidative stress. In these animals, 8-isoprostane levels in the lung tissue were significantly lower than that observed following DCB230 exposure and no significant changes in lung function were observed following exposure to these particles. From our previously published data, we believe this is due to the enhanced ability of EPFRs to modulate the activity of a number of antioxidant enzymes including catalase and glutathione reductase . Cumulatively, these data suggest that EPFRs play a significant role in the adverse pulmonary responses observed and that oxidative stress is only partly responsible for the observed pulmonary responses.
We employed DIGE-based protein profiling to discern the effects of CGUFP on protein expression in the lungs of exposed neonates. Two of the proteins identified by differential DIGE analysis and validated by western blotting can be linked to a possible sequence of events that begin with a pro-oxidative effect initiated by the EPFRs and culminating with the increased expression of a protein that may be important in the regulation of glucocorticoid sensitivity of T lymphocytes and steroid-insensitive asthma. Those two proteins are PRDX6 and CFL1.
PRDX6 is believed to play an important role in catalyzing the reduction of peroxides via its anti-oxidative activity, which involves removal of H2O2 in primary lung alveolar epithelial type II  and other cells  and inhibition of LDL oxidation by reducing the highly reactive hydroxyl radicals (OH•) and HOCl . Previous studies with EPFR-containing particles demonstrate that EPFRs are a potent stimulator of LPO in vitro  and that these inductive events contribute to EPFR-induced pathologies. Further, PRDX6 can emulate glutathione peroxidase  and inhibit the expression of intercellular adhesion molecule-1 and vascular cell adhesion molecule-1, both of which help recruit macrophages. These observations support the hypothesis that PRDX6 plays a key role in protecting lung tissue from oxidative stress injury (due to peroxides) caused by CGUFPs including EPFRs.
We also observed an increase in CFL1, which has been implicated as an inhibitor of glucocorticoid function in hormone-resistant HeLa cells and in CD4+ T cells from patients with severe, glucocorticoid-insensitive asthma [42–44]. The increase in CFL1 expression in the lungs of neonatal rats exposed to EPFR-containing particles suggests that pediatric exposure to EPFR-containing PM is a potential mechanism responsible for the development of severe, glucocorticoid-insensitive asthma in humans. Ongoing studies in our laboratory seek to confirm the role of CFL1 in dexamethasone insensitivity following exposure to EPFRs.
On the whole, our findings suggest that EPFRs have the potential to induce oxidative stress in the lungs of neonates following acute inhalation exposures and that cytoprotective responses are initiated to deal with this stress (i.e. PRDX6) to protect the developing lung. However, the ability to control the pro-oxidant effects of EPFRs eventually overwhelms the system leading to the increased expression of CFL1 . Active CFL1 then reduces nuclear translocation of glucocorticoid receptors allowing for enhanced proinflammatory transcription . Further studies are needed to confirm the hypotheses generated by these studies, but our data demonstrate a potential mechanistic link between PM exposure and the development of asthma in humans.
On the whole, proteome profiles as well as all the associated cellular responses posits our hypothesis that EPFRs contained in CGUFP have the potency to induce oxidative stress leading to the induction of pulmonary inflammation and dysfunction. Since the formation of EPFRs is linked to a chemical reaction with transition metals contained in ultrafine particles, it is important to realize that the particles must be considered an EPFR-transition metal-substrate system. Separation and independent study of these components is likely to lead to erroneous conclusions concerning the toxicity of environmental PM.
Overall, there are several factors that contribute to the lung injury in neonates following exposure to CGUFP. Data presented in this article suggest that exposure to EPFR-containing CGUFP is one of the major factors influencing the inflammatory and pathophysiological responses. Concerns are to understand whether the changes caused by these exposures are reversible, and the role of long-term exposures in the development of steroid-insensitive asthma in humans.
Brown-Norway rat dams and pups were procured from Harlan (IN, USA). Animals were maintained in ventilated cages housed in a specific, pathogen-free animal facility. Animal protocols were prepared in accordance with the Guide for the Care and Use of Laboratory Animals and approved by the Institutional Animal Care and Use Committee at Louisiana State University Health Sciences Center.
Combustion Generated Ultrafine Particles (CGUFP)
Particles were synthesized essentially as previously described and had a mean diameter of 0.2 μm . In brief, EPFR containing CGUFP (DCB230) was formed as follows: 5% CuO supported on silica was dosed with adsorbate vapors (i.e. 1,2 dichlorobenzene) in a custom made vacuum exposure system for 5 min at 10 torr at 230°C. Any physisorbed dosant was removed by evacuation at 10-2 torr, and the particles were allowed to cool to room temperature under vacuum. The presence of free radicals was confirmed by electron paramagnetic resonance. Based on previous studies  it is known, that 1,2-dichlorobenzene adsorbed on CuO/Silica particles at 230°C forms primarily o-semiquinone EPFRs. Non-EPFR containing CGUFP (DCB50) was formed by dosing silica with adsorbate vapors (i.e. 1,2 dichlorobenzene) in a custom made vacuum exposure system for 5 min at 10 torr at 50°C. The particles were allowed to cool to room temperature and evacuated at 10-2 torr to remove remaining gas phase reactant, which allowed for the formation of particles containing silica matrix and adsorbed molecular 1,2-dichlorobenzene as reference material to 1,2-dichlorobenzene originating EPFRs. The absence of free radicals was confirmed by electron paramagnetic resonance. The size of the particles was confirmed prior to experiments using flow cytometry also as previously described .
Neonates (7 days of age) were divided into three exposure groups: Air, DCB50, and DCB230. Neonates were subjected to nose-only exposures of DCB230 or DCB50 at 200 μg/m3 or air using the In-expose inhalation system (SciReq) for 20 min/day for seven consecutive days. All assessments were performed 24 hours following the final exposure. Cytokines were additionally assessed at 72 hours following the final inhalation exposure. Each group consisted of 4-6 rats, and all experiments were performed in triplicate.
Respiratory mechanics were measured using the forced oscillation technique (FlexiVent; Scireq) as previously described . Exposed rats were anesthetized, intubated, and mechanically ventilated by a computer controlled piston ventilator. Rats were then challenged with an aerosolized bronchoconstrictor, methacholine (MeCh), at increasing doses (MeCh: 0, 6.25, 12.5, 25 mg/ml). At each dose, lung resistance, compliance, and elastance were calculated using the single compartment model and pressure-volume data were captured using a step-wise quasi-static inflation/deflation maneuver to total lung capacity/functional residual capacity, respectively. For comparison among the groups and across measurement days, all data were normalized to their individual baseline resistance values ((value-baseline)/baseline) and plotted as normalized resistance. Baseline values ranged from 0.701 to 0.805 cm H2O·s/ml and were not statistically different among the groups.
Briefly, tissue was homogenized in 5% sulfosalicylic acid (in ice-cold 5% metaphosphoric acid mixture) and centrifuged at 2500 g for 10 min, 4°C. An aliquot of the supernatant was used for the assay. Oxidation of GSH by 5,5'-dithio-bis (2-nitrobenzoic acid) to form nitrobenzoic acid and the enzymatic recycling of glutathione (GSH) from glutathione disulfide (GSSG) by glutathione reductase (GR) in the presence of NADPH were spectrocphotometrically measured at 412 nm .
Lipid peroxidation was measured by a competitive enzyme-linked immunosorbent assay (ELISA) for 8-iso-PGF with a commercial kit (Cayman Chemical, Ann Arbor, MI). The assay is based on the competition between 8-iso-PGF and 8-isoprostane-acetylcholinestase (AChE) conjugate for a limited number of binding sites in each ELISA plate well. The concentration of 8-iso-PGF is inversely proportional to the number of binding sites available, whereas AChE is held constant. For lung homogenates, samples were weighed and homogenized in 0.1 M PBS (1 mM EDTA, 0.005% butylated hydroxytoluene). Samples (BALF and lung homogenates) were transferred to the ELISA plate and incubated with the antibody for 18 hr. The absorbance of the colorimetric enzymatic reaction was read at 405 nm using the SpetraMax-M2 (Molecular Devices, Sunnyvale, CA) and compared with an 8-iso-PGF standard curve to calculate concentration.
Bronchoalveolar lavage fluid (BALF) was harvested in 1 ml of PBS containing 2% BSA. Isolated BALF was used to determine total number of leukocytes. Cytospin slide preparations were made, stained with Diff-Quik (Fisher Scientific), and used for differential cell counts. All counts were performed by two unbiased observers using standard morphological criteria to classify individual leukocyte populations. Six rats from each group were used for these analyses, and 200 cells were counted per animal.
Pulmonary Lymphocyte Characterization
A single cell suspension of lung cells was prepared using a standardized protocol . Briefly, lungs were perfused, excised, cut into small pieces and incubated at 37°C for 1 hour in RPMI-1640 media supplemented by 2% heat inactivated FBS, 1 mg/ml collagenase I (Invitrogen), and 150 μg/ml DNase I (Sigma). After incubation, single cells were obtained by mashing the lung pieces through a 40 μm cell strainer (BD Biosciences). Red blood cells were lysed using 1× RBC lysis buffer (eBioscience) and cells were stained with the following antibodies purchased from BD Pharmingen: APC-CD4, FITC-CD8, and Biotin-CD3, and from Santa Cruz: PE-OX62. Cell staining was determined with an LSRII (BD Biosciences) flow cytometer after gating on the lymphocyte population as determined by forward and side scatter properties. Flow data were analyzed and plotted using FlowJo software (Version 7.2.2 for windows, Tree Star, Inc).
Cytokine Levels in BALF
Cytokine levels were measured from 50 μl of cell-free BALF (rat cytokine assay; Millipore, MO, USA) using a high-throughput multiplex cytokine assay system according to the manufacturer's instructions. Each sample was analyzed in duplicate on the Bio-Plex 200 system (BioRad). A broad range of standards (4.88 to 20,000 pg/ml; depending on the analyte) was used to quantitate a dynamic range of cytokine concentrations. The concentrations of analytes in these assays were quantified using a standard curve and a 5-parameter logistic regression was performed to derive an equation that was then used to predict the concentration of the unknown samples. The following cytokines were assayed: IL-1β, IL-10, IL-18, IFN-γ, TNF-α, GRO/KC, VEGF, MCP-1, and MIP-1α. The data presented excluded any value outside the range of sensitivity for the particular analyte.
Lungs were perfused with PBS and heparin, inflated by gentle infusion of HistoChoice Tissue Fixative (Amresco, Inc.) to total lung capacity, and isolated. The fixed lungs were then dehydrated, embedded in paraffin, and sectioned at 4 μm sections. Each lung section was stained with hematoxylin and eosin (H&E). Lung sections were probed for E-cadherin and α-smooth muscle actin (SMA) using the following antibodies (Abcam) and dilutions: anti-SMA (1:1000), E-cadherin (1:400). Primary antibodies were respectively detected with goat anti-mouse Alexa Fluor 568 (1:500) and with Goat anti-Rabbit Alexa Fluor 488 (1:500) both from Invitrogen. Cell nuclei were stained with DAPI.
Alveolar septal lesioning was quantified from H&E stained lung sections of animals exposed to air, DCB50, and DCB230. The destruction of alveolar walls was quantified using the destructive index (DI) method . A grid with 42 points that were at the center of hairline crosses was superimposed on the lung field. Structures lying under these points were classified as normal (N) or destroyed (D) alveolar and/or duct spaces. Points falling over other structures, such as duct walls, alveolar walls, etc. did not enter into the calculations. The DI was calculated using the formula: DI = D/(D + N) × 100.
To quantify smooth muscle thickness, images of major airways were taken at 40× magnification from lung sections of rats exposed to DCB230, DCB50, or air. Using AxioVision software, a line perpendicular to the basal lamina was drawn from the basement membrane to the edge of the smooth muscle layer. Smooth muscle cells were identified according to morphology and stain. After this was repeated 4-5× per airway, an average was taken from the software-generated thickness values (μm). Averages from 3 different animals per exposure group were compared.
2D-Gel Electrophoresis and Mass Spectroscopy to Identify Proteins
Tissue Preparation and Protein quantification
Lungs from exposed animals (4 animals/group) were sonicated following the addition of 400 μl of Lysis Buffer (7 M Urea, 2 M ThioUrea, 4% CHAPS, 30 mM Tris, pH8.5, and 20% glycerol). Sonication was performed 4 times at 25% amplitude for 15 seconds each; returning to ice in between. Protein concentrations were determined by Bradford protein assay using an 8 point BSA standard concentration curve. For CyDye labeling, samples were aliquotted into 50 μg fractions.
The mixed internal standard methodology of  was used in these studies. Briefly, aliquots of 50 μg protein from each sample were labeled with 400 pmol of either Cy3 or Cy5 (vehicle and/or treated randomized). In a similar fashion, 50 μg of each of the samples (vehicle and treated) was pooled and labeled with 400 pmol Cy2 per 50 μg standard. Equal protein loading of replicate #1 versus replicate #2, and the standard-sample mixture was resolved between pH 3-10NL per gel. Samples were dissolved in rehydration buffer (7 M Urea, 2 M ThioUrea, 4% CHAPS, 20% glycerol) supplemented with IPG buffer (GE Healthcare).
2-D gel electrophoresis and imaging
Cy-dye labeled samples for each subject (410 μl final volume) were actively rehydrated into 24 cm 3-10NL immobilized pH gradient (IPG) strips (GE Healthcare) for 15 hours, followed by isoelectric focusing using an IPGphor (GE Healthcare) step 1: Step 300 V for 2 hours, step 2: Gradient 1000 V for 6 hours, step3: Gradient 8000 V for 6 hours, step 4: Step 8000 V for 8 hours, and step 5: step 200 V for HOLD. The cysteines were reduced and carbamidomethylated, while the proteins were equilibrated into the second-dimensional loading buffer by incubating the focused strips in equilibration buffer (6 M Urea, 20% glycerol, 2% SDS, 375 mM Tris, pH8.8) supplemented with 20 mg/ml DTT for 15 min at room temperature with shaking, followed by 25 mg/ml iodoacetamide in equilibration buffer for an additional 15 min room temperature incubation. IPG strips were then cemented onto 2nd dimension gels using an overlay consisting of 0.5% agarose in SDS running buffer (25 mM Tris, 192 mM glycine, 0.1% SDS, trace of bromophenol blue). Homogeneous polyacrylamide gels (12%) were used for the second-dimensional SDS-PAGE which was then carried out on all gels simultaneously using a DALT6 (GE Healthcare) at 5 W/gel for 30 min followed by 17 W/gel for 4 h. The Cy2 (standard), Cy3 and Cy5 (vehicle or treated) for each gel were individually imaged using mutually exclusive excitation/emission wavelengths of 488 nm (ex) and 520 nm (em) BP40 (bandpass) for Cy2, 532 nm (ex) and 580 nm (em) BP 30 for Cy3, and 633 nm (ex) and 670 nm (em) BP30 for Cy5 using a Typhoon 9400(GE Healthcare). After imaging for Cy-Dye components, the non-silanized glass plate was removed, and the gels were fixed in 10% methanol, 7% acetic acid for 1 h, rinsed in water three times and then incubated in SYPRO Ruby in the dark overnight. The SYPRO Ruby post-stain allows for the correction of unlabeled protein's migration in relation to the 1-3% CyDye labeled migration, and ensures accurate protein excision. Sypro Ruby images were acquired on the same imager using 450 nm (ex) and 610 nm BP40 filter, as well as re-imaged post-excision to ensure accurate protein excision.
DeCyder software (GE Healthcare) was used for simultaneous comparison of abundance changes across all samples, and for comparisons of individual Cy3 and Cy5 samples for each subject. Difference ratios or abundance changes and paired Student's t-test p-values for the variance of these ratios for each protein pair across all samples were calculated. Fold abundance changes are reported, whereby a fold increase is calculated directly from the volume ratio and a fold decrease by the inverse of volume ratio.
Proteins of interest were excised using the Ettan Spot Picker (GE Healthcare) based on a 'hit list' generated in DeCyder. Spots were de-stained by successive changes of 20 mM ammonium bicarbonate and 50% acetonitrile, followed by dehydration with a 20 minute incubation with 100% acetonitrile. Dehydrated gel plugs were automatically digested in-gel with 8 μL 20 μg/ml porcine modified trypsin protease (Promega) in 20 mM ammonium bicarbonate for 6 hours at 37°C. Tryptic peptides were then extracted from the gel plugs in two cycles of 50% acetonitrile, 0.1% trifluoroacetic acid and dried by evaporation. Peptides were reconstituted in 1 μl 50% Acetonitrile and 0.1% trifluoroacetic acid and mixed with an equal volume of 10 mg/ml α-Cyano-4-hydroxy-cinnamic acid for spotting onto a MALDI plate.
Mass Spectrometry and Identification of Proteins
Matrix-assisted laser-desorption ionization time-of-flight mass spectrometry (MALDI-TOF-MS): The parent polypeptides were identified by comparing the profile of tryptic peptide masses generated by the mass spectrometer with predicted tryptic peptides from all known polypeptides using the MASCOT program. Since a covalent modification such as thiolation or nitration changes a peptide mass by a known amount, it is possible through MASCOT and other programs to identify both a protein and its posttranslational modifications.
All data were plotted as mean ± SEM and analyzed using GraphPad Prism (GraphPad Software Inc., Version 5.0.0). Two-way ANOVA (Bonferroni post-test) was used to evaluate the differences of airway responsiveness, airway resistance, elastance, compliance, and BALF cellularity. One-way ANOVA was used to evaluate the differences of PV loop, cytokine levels between groups, alveolar septal destruction index, and smooth muscle proliferation. Tukey's one-way analysis of variance was performed to test for significance between the groups. Differences between means were considered significant when p < 0.05.
combustion generated ultrafine particles
chronic obstructive pulmonary disease
non-EPFR particle consisting of 1,2-dichlorobenzene physisorbed to silica/CuO
EPFRs of 1,2-dichlorobenzene chemisorbed to silica/CuO at 230°C
environmentally persistent free radical-containing pollutant-particle systems
ultrafine particulate matter
reactive oxygen species
This work was supported by NIEHS grants to SAC (5R01ES015050) and to BD and SAC (P42ES013648). The contents of this manuscript are solely the responsibility of the authors and do not necessarily represent the official views of NIH. Special thanks to Drs. Jessie Guidry and Chau-Wen Chou, LSUHSC Proteomics Core Facility.
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